Welcome - this site hosts my personal blog, software, articles, and bio. I'll be posting here about my work in spatial statistics, GIS, public health, and whatever else interests me.
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Space-time modeling in Stan: charting the evolution of U.S. mortality rates
This post is a tutorial on modeling spatial-temporal data using the Stan modeling language, with a focus on areal data. When we take the right approach, Stan can provide a great platform for spatial statistics (presumably, so would other Hamiltonian Monte Carlo samplers). I’ll illustrate by modeling mortality rates for U.S. states and D.C., covering the years 1999 through 2020.
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A minimalist basemap for urban cartography
For a recent project, I a wanted a basemap that would display the local street network with some basic infrastructure and hydrology, but without any labels. It is now easy to add web maps to a GIS project by connecting to OpenStreetMap (OSM), CartoDB, or another web tile server. However, if you want to change the styling or control what type of objects are shown (and at what scales), then a web tile server won’t get you very far.
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Modeling time trends in disease incidence with the 'surveil' R package
This post introduces the ‘surveil’ R package for modelling time trends in disease incidence or mortality, including age-standardization, percent change analyses, and other quantities of interest.
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Spatial analysis with geostan
Re-posting from r-spatial.org, with a few updates.