print or plot a fitted geostan model

Print a summary of model results to the R console, or plot posterior distributions of model parameters.

# S3 method for geostan_fit
print(x, probs = c(0.025, 0.2, 0.5, 0.8, 0.975), digits = 3, pars = NULL, ...)

# S3 method for geostan_fit
plot(x, pars, plotfun = "hist", fill = "steelblue4", ...)

Arguments

x

A fitted model object of class geostan_fit.

probs

Argument passed to quantile; which quantiles to calculate and print.

digits

number of digits to print

pars

parameters to include; a character string (or vector) of parameter names.

...

additional arguments to rstan::plot or rstan::print.stanfit.

plotfun

Argument passed to rstan::plot. Options include histograms ("hist"), MCMC traceplots ("trace"), and density plots ("dens"). Diagnostic plots are also available such as Rhat statistics ("rhat"), effective sample size ("ess"), and MCMC autocorrelation ("ac").

fill

fill color for histograms and density plots.

Examples

data(georgia)
georgia$income <- georgia$income/1e3

fit <- stan_glm(deaths.male ~ offset(log(pop.at.risk.male)) + log(income),
                centerx = TRUE,
                data = georgia,
                family = poisson(),
                chains = 2, iter = 600) # for speed only


# print and plot results
print(fit)
plot(fit)